Basic Information
VIS ID
TVIS30008123
Fusion event
HIV-SPECC1L-ADORA2A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q11.23
Reference genome
GRCh37/hg19
Start
24772243/24376275 (Hg38)
End
24772243/24376275 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
SPECC1L-ADORA2A
Nearest miRNA
hsa-mir-1286/Upstream/1489896; hsa-let-7a-3/Downstream/1079371;
Nearest TSS
ENST00000624155/Upstream/71879; ENST00000472799/Downstream/35885;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/104768, chr22-CpG: 131/Downstream/47294
Upstream sequence
cagatgatgtgatttatgtctagatttttttaagagatagggtctcactatgttgcccagtctaggttcagacttctgggctcaagtggtcctcccactt
Downstream sequence
ccaacatcgtgagtagctgggactacaggtgtaggccatcacatccagcttatatctagaaaacctttaagaattcacataaaaactgttggaactagta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate