Basic Information
VIS ID
TVIS30008124
Fusion event
HIV-ADORA2A-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q11.23
Reference genome
GRCh37/hg19
Start
24835963/24439995 (Hg38)
End
24835963/24439995 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
ADORA2A-AS1
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-1286/Upstream/1553616; hsa-let-7a-3/Downstream/1015651;
Nearest TSS
ENST00000624155/Upstream/7155; ENST00000382760/Downstream/54112;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/15153, chr22-CpG: 98/Downstream/54449
Upstream sequence
GGGTGGGTTTGGAGGGGAGAAATGGCATCTCCTTTGGCCTGGGACCTCCTCCCCTCTTTTACCCTCCATGCTGCCTCTCCTCAAGGGCTTCTGGAGTCCC
Downstream sequence
CAAGTCAAATGGCAAATGGGGAAGAGAAGACAGGGTATGGAGTACAAGAGGCCTAGATCCTCTATAGGTCTGATCTGGCTGGTGCTGCCCCTAGCCAGTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate