Home
Browse
Prime browse
Clustered VIS browse
Search
Curation
Gene
Target gene
All
Oncogene
Tumor suppressor gene
Nearby gene
All
Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
Download
Statistics
Help
VISDB
Viral Integration Site DataBase
Homepage
Prime VIS Browse Options
TVIS30008126
Basic Information
VIS ID
TVIS30008126
Fusion event
HIV-CHEK2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
29127442/28731454 (Hg38)
End
29127442/28731454 (Hg38)
Orient
-
Location type
Intronic
Target gene
CHEK2
miRNAs that regulate target gene
hsa-mir-182-5p
;
hsa-mir-2053
;
hsa-mir-513a-5p
;
hsa-mir-4465
;
hsa-mir-26b-5p
;
hsa-mir-26a-5p
;
hsa-mir-1297
;
hsa-mir-8068
;
hsa-mir-5697
;
hsa-mir-6074
;
hsa-mir-5694
;
hsa-mir-383-5p
;
hsa-mir-376c-3p
;
hsa-mir-595
;
hsa-mir-4803
;
hsa-mir-27a-3p
;
hsa-mir-3681-3p
;
hsa-mir-216a-3p
;
hsa-mir-27b-3p
;
hsa-mir-128-3p
;
hsa-mir-4999-3p
;
hsa-mir-7153-3p
;
hsa-mir-3680-5p
;
hsa-mir-2113
;
hsa-mir-548q
;
hsa-mir-548aw
;
hsa-mir-1468-3p
;
hsa-mir-548x-5p
;
hsa-mir-548g-5p
;
hsa-mir-548f-5p
;
hsa-mir-548aj-5p
;
hsa-mir-5695
;
hsa-mir-3691-3p
;
hsa-mir-6736-3p
;
hsa-mir-454-3p
;
hsa-mir-4295
;
hsa-mir-3666
;
hsa-mir-301b-3p
;
hsa-mir-301a-3p
;
hsa-mir-130b-3p
;
hsa-mir-130a-3p
;
hsa-mir-519c-3p
;
hsa-mir-519b-3p
;
hsa-mir-519a-3p
;
hsa-mir-559
;
hsa-mir-548y
;
hsa-mir-548w
;
hsa-mir-548o-5p
;
hsa-mir-548j-5p
;
hsa-mir-548i
;
hsa-mir-548h-5p
;
hsa-mir-548d-5p
;
hsa-mir-548c-5p
;
hsa-mir-548bb-5p
;
hsa-mir-548b-5p
;
hsa-mir-548ay-5p
;
hsa-mir-548au-5p
;
hsa-mir-548as-5p
;
hsa-mir-548ar-5p
;
hsa-mir-548aq-5p
;
hsa-mir-548ap-5p
;
hsa-mir-548am-5p
;
hsa-mir-548ak
;
hsa-mir-548ae-5p
;
hsa-mir-548ad-5p
;
hsa-mir-548ab
;
hsa-mir-548a-5p
;
hsa-mir-548n
;
hsa-mir-19b-3p
;
hsa-mir-19a-3p
;
hsa-mir-3942-3p
;
hsa-mir-4756-3p
;
hsa-mir-3919
;
hsa-mir-205-3p
;
hsa-mir-5582-5p
;
hsa-mir-124-3p
;
hsa-mir-548an
Nearest miRNA
hsa-mir-1286/Upstream/271506; hsa-let-7a-3/Downstream/1275595;
Nearest TSS
ENST00000624155/Upstream/953;
ENST00000485599/Downstream/3267;
Nearest CpG islands
None/Target,
chr22-CpG: 279/Upstream/51223
,
chr22-CpG: 53/Downstream/10424
Nearest cancer related gene
CHEK2
(TSG, No orient, 0)
Upstream sequence
ttgggaggccaaggcgggcagatcacctgaggtcaggagtttgaaaccagcctggccaatatgatgacaacccgtccctactaaaaaatacagaacttag
Downstream sequence
ccacggtggtgggcacctgtaatcccagctactcaggtggctgaggcaggagaatggcttcaacccaggagattgaggttgcagtgagccaagatcgtac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Central Memory CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
Download
Curate