VISDB Viral Integration Site DataBase

VIS ID

TVIS30008146

Fusion event

HIV-SF3A1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr22

Cytoband

q12.2

Reference genome

Start

End

30743628/30347639 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-103a-3p ; hsa-mir-744-5p ; hsa-mir-615-3p ; hsa-mir-193b-3p ; hsa-mir-450a-5p ; hsa-let-7f-5p ; hsa-let-7a-5p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-5096 ; hsa-mir-32-3p ; hsa-mir-4668-3p ; hsa-mir-548as-3p ; hsa-mir-548c-3p ; hsa-mir-744-3p ; hsa-mir-106a-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-3907 ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6787-3p ; hsa-mir-1285-5p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-6809-3p ; hsa-mir-4753-3p ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-2052 ; hsa-mir-8064 ; hsa-mir-627-3p ; hsa-mir-130b-5p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-566 ; hsa-mir-6789-3p ; hsa-mir-661 ; hsa-mir-4252 ; hsa-mir-4486 ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-652-3p ; hsa-mir-508-5p ; hsa-mir-1276 ; hsa-mir-4696 ; hsa-mir-4522 ; hsa-mir-451b ; hsa-mir-4432 ; hsa-mir-1267 ; hsa-mir-129-5p ; hsa-mir-3194-3p ; hsa-mir-3672 ; hsa-mir-367-5p ; hsa-mir-4294 ; hsa-mir-431-5p ; hsa-mir-5691 ; hsa-mir-5698 ; hsa-mir-6805-3p ; hsa-mir-6864-3p ; hsa-mir-8055 ; hsa-mir-924

Nearest miRNA

hsa-mir-1286/Upstream/340526; hsa-let-7a-3/Downstream/383918;

Nearest TSS

Nearest CpG islands

None/Target, chr22-CpG: 279/Upstream/20410, chr22-CpG: 81/Downstream/8955

Upstream sequence

GCCTTCAAAACCTCAGGATAATGAAAAAATGTCCCTATAATGATGTTTAGGGAACCCTGATTTTTAAAATGTCCCAACAGTAATATTCAAAGTGCCACAC

Downstream sequence

TTATATACAACACCTGTGTcagtcagaaagtacacggaccttaaagacacaagatatgaacacgttcaagtctcaggttcactgctgactcactctgacc