Basic Information
VIS ID
TVIS30008148
Fusion event
HIV-SFI1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
31921234/31525248 (Hg38)
End
31921234/31525248 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA22B
Target gene
SFI1
miRNAs that regulate target gene
hsa-mir-1-3p
Nearest miRNA
hsa-mir-1286/Upstream/365129; hsa-let-7a-3/Downstream/96219;
Nearest TSS
ENST00000624155/Upstream/16963; ENST00000486708/Downstream/3497;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/28137, chr22-CpG: 53/Downstream/105063
Upstream sequence
gcagaagtttttgagattatcccattttgtttacttttgcttttgttgcctgtgcttttgatgttttattcataaaatcttttcctagacgtttgaagta
Downstream sequence
tttcttctcgtagctttctagttttggatcttacatttaggtctttgatccattttgagttgatatttgtatagggtgagaggtggggagtctagtttca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate