Basic Information
VIS ID
TVIS30008162
Fusion event
HIV-C1QTNF6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
37587165/37191125 (Hg38)
End
37587165/37191125 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA22A
Target gene
C1QTNF6
miRNAs that regulate target gene
hsa-mir-29a-3p ; hsa-mir-760 ; hsa-mir-4743-5p ; hsa-mir-765 ; hsa-mir-4721 ; hsa-mir-4653-5p ; hsa-mir-3921 ; hsa-mir-3065-3p ; hsa-mir-4733-3p ; hsa-mir-5088-5p ; hsa-mir-4779 ; hsa-mir-29c-3p ; hsa-mir-29b-3p ; hsa-mir-1911-3p ; hsa-mir-3714 ; hsa-mir-8055 ; hsa-mir-7977 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-564 ; hsa-mir-342-3p ; hsa-mir-338-3p ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-1228-3p ; hsa-mir-3622a-5p ; hsa-mir-3162-5p ; hsa-mir-566 ; hsa-mir-6720-3p ; hsa-mir-4691-3p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-6760-5p
Nearest miRNA
hsa-mir-1286/Upstream/904218; hsa-let-7a-3/Downstream/653147;
Nearest TSS
ENST00000624155/Upstream/2836; ENST00000467664/Downstream/6623;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/8505, chr22-CpG: 92/Downstream/7500
Nearby gene
C1QTNF6(No orient, 2835)
Upstream sequence
gttttgcttgatatatatgtgttagttttccaagagtcttggatgatgttttctttttctctgcatttaagagtactcatcagagtcctatagctgatta
Downstream sequence
taaaccaccttttgaagagaataaaagcaagacaacaattgtctatggatgacagaaagacttagagcagtcatggttaaagaattaatatcattgacta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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