Basic Information
VIS ID
TVIS30008172
Fusion event
HIV-CBY1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
39058727/38662722 (Hg38)
End
39058727/38662722 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA22A
Target gene
CBY1
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-30c-5p ; hsa-mir-138-5p ; hsa-mir-636 ; hsa-mir-548q ; hsa-mir-3190-3p ; hsa-mir-4327 ; hsa-mir-3907 ; hsa-mir-6833-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-562 ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-548n ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-4671-3p ; hsa-mir-3658 ; hsa-mir-6743-3p ; hsa-mir-6870-3p ; hsa-mir-6829-5p ; hsa-mir-4752 ; hsa-mir-142-3p ; hsa-mir-3202 ; hsa-mir-4255 ; hsa-mir-1244 ; hsa-mir-548c-3p ; hsa-mir-302c-5p ; hsa-mir-3143 ; hsa-mir-4533
Nearest miRNA
hsa-mir-1286/Upstream/673869; hsa-let-7a-3/Downstream/2151161;
Nearest TSS
ENST00000624155/Upstream/6034; ENST00000467118/Downstream/2873;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/5673, chr22-CpG: 61/Downstream/19078
Upstream sequence
tgggaccacaggcgtacaccaccatgcccagctaattttttgtatctttggtagagacagggttttgtttgccatgttgcccaggatggtcttgaactcc
Downstream sequence
tggactcaagttatttgcctgcctctgcctcccaaagtgctaggatttataggcatgaggcaccatacccagcctggggtaggcaaacattttaaaaata
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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