Basic Information
VIS ID
TVIS30008173
Fusion event
HIV-JOSD1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
39090036/38694031 (Hg38)
End
39090036/38694031 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA22A
Target gene
JOSD1
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-186-5p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-6771-5p ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-6746-5p ; hsa-mir-6849-3p ; hsa-mir-3614-5p ; hsa-mir-6500-3p ; hsa-mir-4293 ; hsa-mir-4802-3p ; hsa-mir-4443 ; hsa-mir-3978 ; hsa-mir-7847-3p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-1324 ; hsa-mir-1827 ; hsa-mir-3688-3p ; hsa-mir-2392 ; hsa-mir-4524b-3p ; hsa-mir-4796-3p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-30e-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p
Nearest miRNA
hsa-mir-1286/Upstream/705178; hsa-let-7a-3/Downstream/2119852;
Nearest TSS
ENST00000624155/Upstream/4708; ENST00000470836/Downstream/5939;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/11636, chr22-CpG: 159/Downstream/6337
Upstream sequence
ggaaataattactattttataggactgttggagaattcagttatttcatatatgtTCAATCAAACACTAAATCCCTGGATAGTTTTTTACTCTATATCCC
Downstream sequence
TCACAGCTAGGCACTGGCAACTCAATAAACACGTTAGGCAATTTGAATACAGGAAATATTGAGTAGCTTCCATCTCATGCTAGAGGAATGGTCATTTGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate