VISDB Viral Integration Site DataBase

VIS ID

TVIS30008211

Fusion event

HIV-NUP50 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr22

Cytoband

q13.31

Reference genome

Start

End

45571475/45175594 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-340-5p ; hsa-mir-124-3p ; hsa-mir-1-3p ; hsa-mir-196a-5p ; hsa-mir-103a-3p ; hsa-mir-16-5p ; hsa-mir-877-3p ; hsa-mir-615-3p ; hsa-mir-107 ; hsa-mir-203a-3p ; hsa-mir-3163 ; hsa-mir-3662 ; hsa-mir-5011-5p ; hsa-mir-6508-5p ; hsa-mir-8066 ; hsa-mir-8067 ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-545-3p ; hsa-mir-374b-3p ; hsa-mir-548p ; hsa-mir-4282 ; hsa-mir-4524a-5p ; hsa-mir-4524b-5p ; hsa-mir-6838-5p ; hsa-mir-302b-5p ; hsa-mir-302d-5p ; hsa-mir-221-5p ; hsa-mir-3128 ; hsa-mir-8073 ; hsa-mir-204-3p ; hsa-mir-206 ; hsa-mir-613 ; hsa-mir-449b-3p ; hsa-mir-671-5p ; hsa-mir-1258 ; hsa-mir-3148 ; hsa-mir-4646-5p ; hsa-mir-4786-3p ; hsa-mir-6716-5p ; hsa-mir-182-5p ; hsa-mir-302c-5p ; hsa-mir-34a-3p ; hsa-mir-6881-3p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-4496 ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-141-5p ; hsa-mir-660-5p ; hsa-mir-1273d ; hsa-mir-6771-3p ; hsa-mir-212-3p ; hsa-mir-132-3p ; hsa-mir-302a-5p ; hsa-mir-500a-5p ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-4642 ; hsa-mir-3622b-5p ; hsa-mir-410-3p ; hsa-mir-96-5p ; hsa-mir-1271-5p ; hsa-mir-3161 ; hsa-mir-376a-2-5p ; hsa-mir-3935 ; hsa-mir-3682-3p ; hsa-mir-140-3p

Nearest miRNA

hsa-mir-1281/Upstream/3252297; hsa-let-7a-3/Downstream/25360;

Nearest TSS

Nearest CpG islands

None/Target, chr22-CpG: 279/Upstream/10692, chr22-CpG: 26/Downstream/27246

Upstream sequence

TAGGCAGTAAATGGTCTTTGACTGAGTAGTACATGAAGTATCTTTCATTTGGGATTTAGTTTTATTGAGCCGCTTCAGtaattctgaggctgggtggtgg

Downstream sequence

gtacataggtttattgcattagtctttcttaccttttatgtcctaaaaatacacataatatattttttaaatgtCCTTCCTGCCTGTTTCAGGAAAGCAG