Basic Information
VIS ID
TVIS30008221
Fusion event
HIV-TAFA5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
49044521/48648709 (Hg38)
End
49044521/48648709 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA22A
Target gene
TAFA5
Nearest miRNA
hsa-let-7a-3/Upstream/374294; hsa-mir-12114/Downstream/131586;
Nearest TSS
ENST00000624155/Upstream/72256; ENST00000406880/Downstream/44538;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/1889, chr22-CpG: 24/Downstream/19017
Upstream sequence
gcaggtggatcacgaggtcaggagttcaggaccagcctggtcaagatggtgaaaccctgtctctactaaaaatacaaaattacccgggcgtggtggtgtg
Downstream sequence
caccagctactcgggaggctgaggcagagaattgtttgaacccgggaggcggaggttgcagtgagccgagatcacgccactgcactccagcctgggtggc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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