Basic Information
VIS ID
TVIS30008224
Fusion event
HIV-ZBED4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
50258231/49864583 (Hg38)
End
50258231/49864583 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZBED4
miRNAs that regulate target gene
hsa-mir-484 ; hsa-mir-98-5p
Nearest miRNA
hsa-let-7a-3/Upstream/321117; hsa-mir-12114/Downstream/98283;
Nearest TSS
ENST00000624155/Upstream/10741; ENST00000610245/Downstream/37645;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/7718, chr22-CpG: 26/Downstream/21808
Upstream sequence
cacgtccgataaacccatcaaagtcgaaaatgcacttaatacCTGATTGGAGCctgggcatggtggcttacgcctataatcccagcactttgggaggttg
Downstream sequence
aggtgggaggatcacttgagcctgggagtttgagaccagcctcagcaacctagtgagaccccctctctacaaaaaatgttttaaaatattagccaggtgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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