VISDB Viral Integration Site DataBase

VIS ID

TVIS30008237

Fusion event

HIV-SBF1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr22

Cytoband

q13.33

Reference genome

Start

End

50889119/50450690 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-877-3p ; hsa-mir-744-5p ; hsa-mir-296-3p ; hsa-mir-503-5p ; hsa-mir-346 ; hsa-mir-324-3p ; hsa-mir-320a ; hsa-mir-149-5p ; hsa-mir-23b-3p ; hsa-mir-196a-5p ; hsa-mir-16-5p ; hsa-mir-30d-5p ; hsa-mir-30e-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p ; hsa-mir-1237-5p ; hsa-mir-125b-2-3p ; hsa-mir-1296-3p ; hsa-mir-185-3p ; hsa-mir-1908-5p ; hsa-mir-2110 ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-302e ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-3191-3p ; hsa-mir-3196 ; hsa-mir-329-3p ; hsa-mir-362-3p ; hsa-mir-3714 ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-3941 ; hsa-mir-4269 ; hsa-mir-4271 ; hsa-mir-4283 ; hsa-mir-4481 ; hsa-mir-4488 ; hsa-mir-4514 ; hsa-mir-4675 ; hsa-mir-4690-5p ; hsa-mir-4692 ; hsa-mir-4697-5p ; hsa-mir-4706 ; hsa-mir-4718 ; hsa-mir-4725-3p ; hsa-mir-4731-3p ; hsa-mir-4731-5p ; hsa-mir-4741 ; hsa-mir-4745-5p ; hsa-mir-4747-5p ; hsa-mir-4749-5p ; hsa-mir-4801 ; hsa-mir-491-5p ; hsa-mir-512-3p ; hsa-mir-5196-5p ; hsa-mir-520a-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-520e ; hsa-mir-5582-5p ; hsa-mir-5589-5p ; hsa-mir-603 ; hsa-mir-605-3p ; hsa-mir-637 ; hsa-mir-663a ; hsa-mir-6715b-5p ; hsa-mir-6777-5p ; hsa-mir-6780b-5p ; hsa-mir-6787-5p ; hsa-mir-6808-5p ; hsa-mir-6816-5p ; hsa-mir-6846-5p ; hsa-mir-6848-5p ; hsa-mir-6889-5p ; hsa-mir-6893-5p ; hsa-mir-8485 ; hsa-mir-92b-5p ; hsa-mir-940

Nearest miRNA

hsa-let-7a-3/Upstream/43166;

Nearest TSS

Nearest CpG islands

None/Target, chr22-CpG: 279/Upstream/3409, chr22-CpG: 17/Downstream/3717

Upstream sequence

AAAAGCCAGTGTGGCAAGACCTTACCGAAGACACAAAGACACAAAACTCCAACTGAAGCCCTGGAGAGGCCACACGCCTTGGGCTGCTCTATCCCTGGAG

Downstream sequence

CTTCTCTAGAGGTGCTGGAGAGCTGCCCAAACAAAGCTTAGAAACAAGCTTCAAACAGACCAAGCTGACGCACAAGCTCATTACCTACCTGCGAGAATAA