Basic Information
VIS ID
TVIS30008240
Fusion event
HIV-chr22 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
50976042/50537613 (Hg38)
End
50976042/50537613 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7a-3/Upstream/130089;
Nearest TSS
ENST00000624155/Upstream/5033; ENST00000609268/Downstream/5037;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/5274, chr22-CpG: 47/Downstream/6528
Nearby gene
ODF3B(No orient, 5034)
Upstream sequence
aacccatctctactaaaaatacaaaattaaccggacttggtgtcaggcacctgtaatcctagctacttagggaggctgaggcaggagaatcgcttgaacc
Downstream sequence
tgggaggtggaggttgcagtgagccaagactgcaccactgcactccagcctgggggacagagcgagactctgtcacaaacaaacaaaCAGCTCCTCAAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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