Basic Information
VIS ID
TVIS30008242
Fusion event
HIV-CHKB-DT integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
51026837/50588408 (Hg38)
End
51026837/50588408 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
CHKB-DT
Nearest miRNA
hsa-let-7a-3/Upstream/180884;
Nearest TSS
ENST00000624155/Upstream/5382; ENST00000609758/Downstream/8744;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/5003, chr22-CpG: 103/Downstream/11657
Upstream sequence
GACATGACCTGGCTGCCACTCTCCTCTCTCTATCCCTTCATTAGACCATTGTGTAATTTAAAAAAATAGGTTATAAATTTCTTTTCAAGATAGTAAAGGG
Downstream sequence
GTACGATCAAcaacccatggaacgggagaaagtatttgcaaatcatgtatctgataaggagttaatatccaaaatgtataaggaacttacaaaactcaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate