Basic Information
VIS ID
TVIS30008247
Fusion event
HIV-LOC100130207 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p26.2
Reference genome
GRCh37/hg19
Start
3793873/3752189 (Hg38)
End
3793873/3752189 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC100130207
Nearest miRNA
hsa-let-7g/Downstream/1497988;
Nearest TSS
ENST00000440867/Upstream/124893; ENST00000472075/Downstream/46025;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/572256, chr3-CpG: 190/Downstream/46640
Nearby gene
LRRN1(No orient, 47248)
Upstream sequence
tagggtagcccccagaatcatagcagattcagagagactcccaggatgcctcgtggtcagaacaaatttatagacaaaaaaaaaaaaggtagtgacgtac
Downstream sequence
agaaatcagaagtgaggtagagaaacagctggattggttacgggttgacatttgccttatttgaacacaatttgacactcagcagtgtatcagtggttga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate