Basic Information
VIS ID
TVIS30008248
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p26.1
Reference genome
GRCh37/hg19
Start
4920971/4879287 (Hg38)
End
4920971/4879287 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Downstream/370890;
Nearest TSS
ENST00000440867/Upstream/22532; ENST00000460806/Downstream/6501;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/10434, chr3-CpG: 183/Downstream/98904
Nearby gene
BHLHE40-AS1(No orient, 17522)
Upstream sequence
gtggatcacctgaggtcaggagtttcagaccaacctggccaacatggtgaaaccttgtctctactaaaaatataaaaattagccggacgtggtggtgggc
Downstream sequence
acctgtaattccagctactcgggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagtgaactgagatcatgccattgcactccacc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate