Basic Information
VIS ID
TVIS30008249
Fusion event
HIV-LOC105376934 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p26.1
Reference genome
GRCh37/hg19
Start
5066462/5024777 (Hg38)
End
5066462/5024777 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105376934
Nearest miRNA
hsa-let-7g/Downstream/225400;
Nearest TSS
ENST00000440867/Upstream/44545; ENST00000444332/Downstream/97443;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/37559, chr3-CpG: 35/Downstream/1574
Nearby gene
BHLHE40(No orient, 39597)
Upstream sequence
ctcaggggtattgtgaagataaagttaactcctgggtaggaaaatgctttataaatactaaaatgTgtctacggtcatactatcctgaatgcaccctatc
Downstream sequence
tcgtctaaattctaaaacGCCCCACAAAAATATTTTTACTTTGTTTGTACTATTTGCTTAGCTTTTCCCCGCAAGCAGAAAAAAAAAAAAAAAAAAAGAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate