Basic Information
VIS ID
TVIS30008252
Fusion event
HIV-GRM7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p26.1
Reference genome
GRCh37/hg19
Start
7364326/7322639 (Hg38)
End
7364326/7322639 (Hg38)
Orient
+
Location type
Intronic
Target gene
GRM7
miRNAs that regulate target gene
hsa-mir-34a-5p ; hsa-mir-34c-5p
Nearest miRNA
hsa-mir-4790/Upstream/2072384; hsa-let-7g/Downstream/2957712;
Nearest TSS
ENST00000440867/Upstream/23956; ENST00000445087/Downstream/80411;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/459685, chr3-CpG: 42/Downstream/1178876
Upstream sequence
tatcccttgcccctcacccctcttcccccaccccagtccccaaagtccattaaatcattcctatgtctttgtgtcctcaaagcttagctctcacttataa
Downstream sequence
gtgagaaaatatgatatttgtttttccattcctgagttgcttcacttagaataatggtctccaactccatccaggttgctgacgatgccattatttcatt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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