VISDB Viral Integration Site DataBase

VIS ID

TVIS30008259

Fusion event

HIV-IRAK2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

p25.3

Reference genome

Start

End

10241715/10200031 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-146a-5p ; hsa-mir-335-5p ; hsa-mir-1262 ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-34b-3p ; hsa-mir-3609 ; hsa-mir-3614-5p ; hsa-mir-3664-3p ; hsa-mir-3664-5p ; hsa-mir-3672 ; hsa-mir-3929 ; hsa-mir-4324 ; hsa-mir-4419b ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4478 ; hsa-mir-4504 ; hsa-mir-4522 ; hsa-mir-4649-3p ; hsa-mir-4695-5p ; hsa-mir-4701-3p ; hsa-mir-4722-5p ; hsa-mir-4768-3p ; hsa-mir-485-5p ; hsa-mir-508-5p ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-548ah-5p ; hsa-mir-6500-3p ; hsa-mir-6510-3p ; hsa-mir-6511a-5p ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-665 ; hsa-mir-6720-5p ; hsa-mir-6736-5p ; hsa-mir-6742-3p ; hsa-mir-6761-5p ; hsa-mir-6776-5p ; hsa-mir-6808-5p ; hsa-mir-6864-3p ; hsa-mir-6884-5p ; hsa-mir-6893-5p ; hsa-mir-7160-5p ; hsa-mir-766-3p ; hsa-mir-873-3p ; hsa-mir-940

Nearest miRNA

hsa-mir-4790/Upstream/4949776; hsa-let-7g/Downstream/80320;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/34691, chr3-CpG: 30/Downstream/34310

Upstream sequence

ggctggagtgtagtggtgcgatcttggctcactgcaagctccgcctccccggttcaagtgattctcctgcctcagcctcccaagtagctgagactacagc

Downstream sequence

cgtgtgccaccatgcccaactaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctcaggcagtcca