Basic Information
VIS ID
TVIS30008260
Fusion event
HIV-ATG7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p25.3
Reference genome
GRCh37/hg19
Start
11462066/11420592 (Hg38)
End
11462066/11420592 (Hg38)
Orient
-
Location type
Intronic
Target gene
ATG7
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-320c ; hsa-mir-96-5p ; hsa-mir-4687-5p ; hsa-mir-4726-5p ; hsa-mir-6749-3p ; hsa-mir-4640-5p ; hsa-mir-6837-5p ; hsa-mir-4685-5p ; hsa-mir-3918 ; hsa-mir-4733-3p ; hsa-mir-6895-5p ; hsa-mir-6753-5p ; hsa-mir-4708-3p ; hsa-mir-6826-5p ; hsa-mir-3922-5p ; hsa-mir-451b ; hsa-mir-4753-5p ; hsa-mir-154-5p ; hsa-mir-3127-5p ; hsa-mir-6802-3p ; hsa-mir-6879-3p ; hsa-mir-4518 ; hsa-mir-1266-5p ; hsa-mir-6783-5p ; hsa-mir-4640-3p ; hsa-mir-34a-5p ; hsa-mir-210-3p ; hsa-mir-106a-5p
Nearest miRNA
hsa-mir-12127/Upstream/1026030; hsa-let-7g/Downstream/4075647;
Nearest TSS
ENST00000440867/Upstream/55933; ENST00000607849/Downstream/148332;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/148141, chr3-CpG: 38/Downstream/67718
Upstream sequence
TTCAAAGATGTTGTCAATTTTTCAAACTTAATTGTTCTTTTGTCTTACTGGAAACCTGGCAGAAGATGGCTATTTAcaggcatatcttagattatggggc
Downstream sequence
agaccaccacaatgcagctaatattgcagtaaatcaagtctcacaattcctttggtttctcagtgcatataaaagttacatttttactatactgtagtct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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