Basic Information
VIS ID
TVIS30008263
Fusion event
HIV-OXNAD1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
16334723/16293216 (Hg38)
End
16334723/16293216 (Hg38)
Orient
-
Location type
Intronic
Target gene
OXNAD1
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-155-5p ; hsa-mir-16-5p ; hsa-let-7b-5p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-12127/Upstream/419367; hsa-let-7g/Downstream/639980;
Nearest TSS
ENST00000440867/Upstream/27750; ENST00000607464/Downstream/21223;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/27737, chr3-CpG: 113/Downstream/219604
Upstream sequence
ttgccatcttagcaatatttaagtctgccatgccatgaacatggaatatgcttccatttacttagatctttaatttttttccaatggtgttttgtagttt
Downstream sequence
ttactgtgtaagtcttacacttattttgttaaatttattcccaattattttattcttttttatgctattataagtgtaattggttttctaaatttcacat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate