Basic Information
VIS ID
TVIS30008268
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
20063820/20022328 (Hg38)
End
20063820/20022328 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/707397; hsa-let-7g/Downstream/115237;
Nearest TSS
ENST00000440867/Upstream/9998; ENST00000426228/Downstream/17695;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/74499, chr3-CpG: 96/Downstream/17638
Nearby gene
PP2D1(No orient, 10055)
Upstream sequence
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagGTAGGaagagaaagcaagccaactggaaacagctacatactata
Downstream sequence
taattctaattatatgacattctgtaaaagacaatactatggagacagtaaaatgatcagtggtttccaggggttcaggagaagaagggatgaataggtg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate