Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene228629932320302023591793231950702320257823202294232048012322080123222200232190922322003623227393
Basic Information
VIS ID
TVIS30008271
Fusion event
HIV-UBE2E2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
23268884/23227393 (Hg38)
End
23268884/23227393 (Hg38)
Orient
+
Location type
Intronic
Target gene
UBE2E2
miRNAs that regulate target gene
hsa-mir-186-5p ; hsa-mir-149-5p
Nearest miRNA
hsa-mir-12127/Upstream/3089752; hsa-let-7g/Downstream/2437480;
Nearest TSS
ENST00000440867/Upstream/18693; ENST00000613545/Downstream/272213;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/23836, chr3-CpG: 66/Downstream/578808
Upstream sequence
ccttttccctcttttatatccatatcttcatttgtactttcatactacatatatttttgtcagccagctcagagtcttttcgagggaggcaTATTATTGG
Downstream sequence
TAAACGTACAATGTGAATAACTGAAAGTTTATGTGAATGTGTATTGGTTAGCAAAATGCTGGCATAGTTTTTAAGAGGAGTTATTAACATGATAAAATTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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