Basic Information
VIS ID
TVIS30008276
Fusion event
HIV-SLC4A7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
27458235/27416744 (Hg38)
End
27458235/27416744 (Hg38)
Orient
+
Location type
Intronic
Target gene
SLC4A7
miRNAs that regulate target gene
hsa-mir-30a-5p ; hsa-mir-34a-5p ; hsa-mir-19b-3p ; hsa-mir-25-3p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-20b-5p ; hsa-mir-17-5p
Nearest miRNA
hsa-mir-12127/Upstream/1751805; hsa-let-7g/Downstream/3744960;
Nearest TSS
ENST00000440867/Upstream/15700; ENST00000607601/Downstream/7342;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/47169, chr3-CpG: 132/Downstream/66699
Upstream sequence
cagttcaaactcatattgttcaagggtcaactgTGTATGTATATATGCACATAAAAAATAACAAATAGCCTTCATTTCATATAAAAGCAAcaaagataca
Downstream sequence
atactcatgaatatactcaccaagaaacatgtaaattataaggaaaacttgacaacattctttaagaatacaaaaacttgcttgaaatagaaaatcaact
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate