Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene3064754030595830305997713054834430552222305771833057974630583280305847833058152630581939305820693058227830597942
Basic Information
VIS ID
TVIS30008279
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
30639434/30597942 (Hg38)
End
30639434/30597942 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/4933003; hsa-let-7g/Downstream/563762;
Nearest TSS
ENST00000440867/Upstream/71729; ENST00000295754/Downstream/8560;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/2021463, chr3-CpG: 88/Downstream/8553
Nearby gene
TGFBR2(No orient, 8560)
Nearest cancer related gene
TGFBR2(TSG, No orient, 8560)
Upstream sequence
tttagaaaaatgtgaaaatttttgagcagtaggatacagttaatctgagatcaaatgtcagaatattacaaaaatggcttaagacaggactggatactta
Downstream sequence
gggCTATGGCTCTACTGGAAAGGATGTAagattttatgccctattcatgtcacaggaggcatacctgtacaatcctgtaagccagtctttatattttgag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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