Basic Information
VIS ID
TVIS30008280
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p23
Reference genome
GRCh37/hg19
Start
31035709/30994217 (Hg38)
End
31035709/30994217 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/5329278; hsa-let-7g/Downstream/167487;
Nearest TSS
ENST00000440867/Upstream/99452; ENST00000462235/Downstream/538421;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/99444, chr3-CpG: 196/Downstream/537593
Nearby gene
GADL1(No orient, 99556)
Upstream sequence
gtcccatgattcaattatcttcacctggtccctcccatgacacatgggtattatgggaactaaaattcaagatgagatttcagtggagacaaaaccaaac
Downstream sequence
cacgtcatatatatgtatatactcacacacatataaacatatagaaagagtatatatatatatatacacacacacacgaagatatacatatatacgtgtg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate