Basic Information
VIS ID
TVIS30008285
Fusion event
HIV-GLB1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
33076217/33034725 (Hg38)
End
33076217/33034725 (Hg38)
Orient
+
Location type
Intronic
Target gene
GLB1
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-let-7b-5p
Nearest miRNA
hsa-mir-12127/Upstream/528336; hsa-let-7g/Downstream/2709751;
Nearest TSS
ENST00000440867/Upstream/53; ENST00000485310/Downstream/3294;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/212802, chr3-CpG: 67/Downstream/61866
Upstream sequence
ATGATGTCATGTAGCATGCGGGCAGGTCCATCACAGCCAACATATTGGCCATCTCTGGTGGAGACAATAAGGTGACCCTGAGGAAGCAGTTGGTTGATGG
Downstream sequence
GCAGTGGGTGTGTATCAGTGATGTCAACAAGGGCCAGGGCTCTGTGTCAGCTTCAGTCATAGAGGGCCAGCATAACAAGCAGTGACAAGACAGGCAGAGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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