Basic Information
VIS ID
TVIS30008287
Fusion event
HIV-LOC105377644 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
39386146/39344655 (Hg38)
End
39386146/39344655 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105377644
Nearest miRNA
hsa-mir-12127/Upstream/206389; hsa-let-7g/Downstream/4769557;
Nearest TSS
ENST00000440867/Upstream/14882; ENST00000642442/Downstream/38669;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/163476, chr3-CpG: 125/Downstream/38550
Nearby gene
CCR8(No orient, 10975)
Upstream sequence
accttctacatactaatatgaaaaagacagataatcagtagaaggatgggcagggaatatcagcagacaatttttgaaagaggaagtctaaatggtcaaa
Downstream sequence
aagtgaaagaatacatgctcaacttcactaataactagggaaatacacattaaagccatgataaaatatcactataaacccatcagaatggctaaaactt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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