VISDB Viral Integration Site DataBase

VIS ID

TVIS30008288

Fusion event

HIV-ZNF621 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

p22.1

Reference genome

Start

End

40572559/40531068 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-149-5p ; hsa-mir-488-3p ; hsa-mir-369-3p ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-8084 ; hsa-mir-200b-3p ; hsa-mir-5692a ; hsa-mir-5587-5p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-6801-5p ; hsa-mir-136-5p ; hsa-mir-4716-5p ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-4781-3p ; hsa-mir-296-3p ; hsa-mir-589-3p ; hsa-mir-2115-3p ; hsa-mir-8485 ; hsa-mir-6796-3p ; hsa-mir-99b-3p ; hsa-mir-99a-3p ; hsa-mir-3591-5p ; hsa-mir-580-3p ; hsa-mir-4439 ; hsa-mir-3136-5p ; hsa-mir-4460 ; hsa-mir-4727-3p ; hsa-mir-3190-3p ; hsa-mir-3118 ; hsa-mir-134-5p ; hsa-mir-6857-3p ; hsa-mir-6855-3p ; hsa-mir-4513 ; hsa-mir-4251 ; hsa-mir-1208 ; hsa-mir-6849-5p ; hsa-mir-3681-5p ; hsa-mir-892c-3p ; hsa-mir-4676-3p ; hsa-mir-452-5p ; hsa-mir-433-5p ; hsa-mir-183-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-143-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6499-3p ; hsa-mir-5693 ; hsa-mir-764 ; hsa-mir-1972 ; hsa-mir-4733-5p ; hsa-mir-4438 ; hsa-mir-6757-3p ; hsa-mir-200a-3p ; hsa-mir-141-3p ; hsa-mir-5706 ; hsa-mir-4782-5p ; hsa-mir-5001-3p ; hsa-mir-4320 ; hsa-mir-2682-3p ; hsa-mir-6781-3p ; hsa-mir-6839-5p ; hsa-mir-378j ; hsa-mir-4772-3p ; hsa-mir-518c-5p ; hsa-mir-6787-3p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-550a-3p ; hsa-mir-200c-5p

Nearest miRNA

hsa-mir-12127/Upstream/1392802; hsa-let-7g/Downstream/3583144;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/5870, chr3-CpG: 21/Downstream/84600

Upstream sequence

GGAAGGTTTTGTTTACTTGCGTTTCCATTTCTTCAGAAGAAAATTTTCAAGCCTTCTCACACATTTATGCTTTTGTATATAGTGGTTCCTTTAGCACAGG

Downstream sequence

TACCACAGTGGCTTACAGCTCTCTGATCCAACTTCTGTTCCAGCTGACTTTCTGAAACTAATCATCTTGTATCCCTGAATATTGTGTGGGATATTTAAAT