Basic Information
VIS ID
TVIS30008292
Fusion event
HIV-CCR3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
46264617/46223126 (Hg38)
End
46264617/46223126 (Hg38)
Orient
-
Location type
Intronic
Target gene
CCR3
Nearest miRNA
hsa-mir-12127/Upstream/1361145; hsa-let-7g/Downstream/1626429;
Nearest TSS
ENST00000440867/Upstream/14730; ENST00000484025/Downstream/19255;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/227145, chr3-CpG: 26/Downstream/241545
Nearby gene
CCR1(No orient, 14785)
Upstream sequence
GTTAACACTTACAGTCTTGCATGCCAAGTTTTAAAACTCTTTTGAggccaggtgtgttggctcacgcctgtaatcctaacactttgggaggctgaggtgg
Downstream sequence
gtggatcatgaggtcaggagttcgagaccagcctggccaatgtggtgaaaccctgtctctactaaaaatacaaaaattagctgggtgtggtggtggacat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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