Basic Information
VIS ID
TVIS30008307
Fusion event
HIV-DHX30 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
47855020/47813530 (Hg38)
End
47855020/47813530 (Hg38)
Orient
+
Location type
Intronic
Target gene
DHX30
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-93-3p ; hsa-mir-589-3p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-149-5p ; hsa-mir-15b-5p ; hsa-mir-92a-3p ; hsa-mir-16-5p ; hsa-mir-1260b
Nearest miRNA
hsa-mir-12127/Upstream/2951549; hsa-let-7g/Downstream/36025;
Nearest TSS
ENST00000440867/Upstream/2846; ENST00000471082/Downstream/5697;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/9865, chr3-CpG: 68/Downstream/11325
Upstream sequence
CTTGACAGGGCTATAGGGTAGAGTTCACAATGTGTTTATAGGAGGTAAAGTAGCCTGTGGGGACTTTAGGGGCCAGATCCTGAGAGCTTTGTATTTCTTA
Downstream sequence
GAACATGACTTTTTTTCTTCAAGAGACTGAAGAGTAAAGGGCCTGTAGCCCGTGTTGAAGCTGATTCTGAGGCTTCTGTCTGAGGATATTTTACAAATAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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