VISDB Viral Integration Site DataBase

VIS ID

TVIS30008311

Fusion event

HIV-PRKAR2A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

p21.31

Reference genome

Start

End

48851078/48813645 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-197-3p ; hsa-mir-155-5p ; hsa-mir-103a-3p ; hsa-mir-16-5p ; hsa-let-7b-5p ; hsa-mir-769-3p ; hsa-mir-1260b ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-451b ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-6758-5p ; hsa-mir-6856-5p ; hsa-mir-6838-5p ; hsa-mir-15a-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-497-5p ; hsa-mir-548e-5p ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-1273h-5p ; hsa-mir-30b-3p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-4425 ; hsa-mir-92a-1-5p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-655-5p ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-7162-3p ; hsa-mir-544b ; hsa-mir-4772-3p ; hsa-mir-1304-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-6777-3p ; hsa-mir-6890-3p ; hsa-mir-4674 ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-6749-3p ; hsa-mir-4437 ; hsa-mir-6815-3p ; hsa-mir-378g ; hsa-mir-532-3p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-1267 ; hsa-mir-129-1-3p ; hsa-mir-129-2-3p ; hsa-mir-17-3p ; hsa-mir-2276-5p ; hsa-mir-2392 ; hsa-mir-3173-5p ; hsa-mir-363-5p ; hsa-mir-3651 ; hsa-mir-367-5p ; hsa-mir-4287 ; hsa-mir-4302 ; hsa-mir-4423-5p ; hsa-mir-4469 ; hsa-mir-4496 ; hsa-mir-4532 ; hsa-mir-4651 ; hsa-mir-4666a-3p ; hsa-mir-4685-3p ; hsa-mir-4687-5p ; hsa-mir-4747-5p ; hsa-mir-5087 ; hsa-mir-5196-5p ; hsa-mir-608 ; hsa-mir-642a-5p ; hsa-mir-6499-3p ; hsa-mir-6501-5p ; hsa-mir-6505-5p ; hsa-mir-651-3p ; hsa-mir-6745 ; hsa-mir-6760-3p ; hsa-mir-6773-3p ; hsa-mir-6779-3p ; hsa-mir-6799-3p ; hsa-mir-6867-3p ; hsa-mir-6871-5p ; hsa-mir-6879-3p ; hsa-mir-6892-3p ; hsa-mir-7113-3p ; hsa-mir-744-3p ; hsa-mir-8069

Nearest miRNA

hsa-mir-12127/Upstream/169365; hsa-let-7g/Downstream/206503;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/96174, chr3-CpG: 104/Downstream/33425

Upstream sequence

tagccaggcgtggtggcacgcacctgtagtcttagctacttgggatgctgaggcagaagaatcacttgaacccgggaggcggaggttgcagtgagccgag

Downstream sequence

attgtgccactgcactccagcctgggcaacagagcgagactccatctcaaaaaaacaaaacaaaacaaaacaaaacaaaacaaaaACGCTAAAAGCTGTC