Basic Information
VIS ID
TVIS30008321
Fusion event
HIV-QARS integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
49135411/49097978 (Hg38)
End
49135411/49097978 (Hg38)
Orient
-
Location type
Intronic
Target gene
QARS
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-let-7b-5p ; hsa-mir-744-5p ; hsa-mir-9-5p ; hsa-mir-15b-5p ; hsa-mir-17-5p
Nearest miRNA
hsa-mir-12127/Upstream/77269; hsa-let-7g/Downstream/1876;
Nearest TSS
ENST00000440867/Upstream/3615; ENST00000476495/Downstream/139;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/3566, chr3-CpG: 37/Downstream/6523
Upstream sequence
aactccctcaggtggtgaggattaactaagggaatgtatgcagagcacttggcacaatgaacggcagccactgtcactgctGCAGATGAGGGCAGGTGAG
Downstream sequence
TAAAGTCAAGCACCTTTCCCTGATGGCTGTCTGGATCCACGGAGAAATATCCAAGACGCTCAAACTGGAACTTGTCGAAGGGTTTTGCCAGGGCCACAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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