VISDB Viral Integration Site DataBase

VIS ID

TVIS30008336

Fusion event

HIV-RAD54L2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

p21.2

Reference genome

Start

End

51610720/51576704 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-5581-3p ; hsa-mir-6892-5p ; hsa-mir-4668-5p ; hsa-mir-6077 ; hsa-mir-3135a ; hsa-mir-5584-5p ; hsa-mir-3142 ; hsa-mir-1245b-5p ; hsa-mir-4475 ; hsa-mir-614 ; hsa-mir-7-5p ; hsa-mir-4429 ; hsa-mir-3620-5p ; hsa-mir-1587 ; hsa-mir-377-3p ; hsa-mir-4741 ; hsa-mir-4675 ; hsa-mir-762 ; hsa-mir-5001-5p ; hsa-mir-4498 ; hsa-mir-4492 ; hsa-mir-6829-5p ; hsa-mir-4656 ; hsa-mir-4663 ; hsa-mir-378g ; hsa-mir-342-3p ; hsa-mir-1207-3p ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-129-5p ; hsa-mir-3152-5p ; hsa-mir-4774-3p ; hsa-mir-6836-3p ; hsa-mir-6781-3p ; hsa-mir-2682-3p ; hsa-mir-653-3p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6884-3p ; hsa-mir-2053 ; hsa-mir-3941 ; hsa-mir-4719 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-6885-3p ; hsa-mir-3074-5p ; hsa-mir-7162-5p ; hsa-mir-3977 ; hsa-mir-516b-3p ; hsa-mir-516a-3p ; hsa-mir-2115-5p ; hsa-mir-6893-3p ; hsa-mir-370-3p ; hsa-mir-383-3p

Nearest miRNA

hsa-mir-12127/Upstream/901541; hsa-let-7g/Downstream/691574;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/37447, chr3-CpG: 103/Downstream/94342

Upstream sequence

ttttttctagattttctagtttatttgtgtagaggtgtttatagtattctctgatggtagtttgtatttctgtgggatcggtggtgatgttccctttatc

Downstream sequence

atttttattgtgtctatttgattcttctctcttttcttctttattattcttgttagcagtctatcaattttgttgatcttttcaaaaaaccagctcctgg