Basic Information
VIS ID
TVIS30008338
Fusion event
HIV-LOC105377087 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
51802324/51768308 (Hg38)
End
51802324/51768308 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105377087
Nearest miRNA
hsa-mir-12127/Upstream/1093145; hsa-let-7g/Downstream/499970;
Nearest TSS
ENST00000440867/Upstream/57036; ENST00000472485/Downstream/10879;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/52263, chr3-CpG: 80/Downstream/173288
Nearby gene
IQCF6(No orient, 10253)
Upstream sequence
acttttaaacaaccagatttcatgagaactcattactatcacaagaacagcaccaaggggatgatgctaaaccattcatgagaaactcactctcatgatc
Downstream sequence
ccaccaggccccacctccaacactgcggaatacaattgaacatgagatttggtgaggacacagatccaaaccacaAACCATATCAACCTCCAACTATTAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate