Basic Information
VIS ID
TVIS30008339
Fusion event
HIV-LOC105377087 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
51803521/51769505 (Hg38)
End
51803521/51769505 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105377087
Nearest miRNA
hsa-mir-12127/Upstream/1094342; hsa-let-7g/Downstream/498773;
Nearest TSS
ENST00000440867/Upstream/58233; ENST00000472485/Downstream/9682;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/53460, chr3-CpG: 80/Downstream/172091
Nearby gene
IQCF6(No orient, 9056)
Upstream sequence
tgctattttctttctgtattttgttctatttctatttttgttgttgtttgttcctccattactgccttcttttgtgttaaatattttacgtgtattatgt
Downstream sequence
taatttctctgttgattttttactatatctttgaggttttttttagttgttgttcaagtgcttacaatgtgtatctcaacttctcacaatACGTATTTGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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