Basic Information
VIS ID
TVIS30008344
Fusion event
HIV-NISCH integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
52504192/52470176 (Hg38)
End
52504192/52470176 (Hg38)
Orient
+
Location type
Intronic
Target gene
NISCH
miRNAs that regulate target gene
hsa-mir-455-3p ; hsa-mir-16-5p
Nearest miRNA
hsa-let-7g/Upstream/175868; hsa-mir-12124/Downstream/376287;
Nearest TSS
ENST00000440867/Upstream/11484; ENST00000488157/Downstream/380;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/14184, chr3-CpG: 68/Downstream/17482
Upstream sequence
ctgtctctatttaaaaaaaaaaaaaaaaaaaGCAGTTATCGCTTTTCCTCTTGTAGGATGTTGGGAGGATTCAGGAGCCTTCAGTGGCTCAGGGCATGAC
Downstream sequence
CCAGTATGAATTAGGATCCAAGCGTGTTGTTTGTATGACTGGGGGCTTGGCCTTGTCCTGCCCTTCATCACATCATTTAAAAAGGAAATCCTTCCCGCTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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