Basic Information
VIS ID
TVIS30008356
Fusion event
HIV-SLMAP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
57759101/57773374 (Hg38)
End
57759101/57773374 (Hg38)
Orient
-
Location type
Intronic
Target gene
SLMAP
miRNAs that regulate target gene
hsa-mir-130b-3p ; hsa-mir-21-5p ; hsa-mir-19b-3p
Nearest miRNA
hsa-let-7g/Upstream/1920780; hsa-mir-12124/Downstream/2844431;
Nearest TSS
ENST00000440867/Upstream/15816; ENST00000475055/Downstream/88626;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/16111, chr3-CpG: 90/Downstream/234737
Upstream sequence
TAAGCGGTGGAGATAagtaagtcctcaacatcagtgtcatcaataggttcttggaaactgtgagactaagccacatcatgtactatatgctgtaggaact
Downstream sequence
taattcttgtttatattaattagcctatggtaaaattggtaaaattggtttctttatacaatatgtcattttacttaaaatcactgtttccaaaaaccta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate