Basic Information
VIS ID
TVIS30008360
Fusion event
HIV-FHIT integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p14.2
Reference genome
End
60062918/60077192 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-let-7g/Upstream/4224598; hsa-mir-12124/Downstream/540613;
Nearest cancer related gene
FHIT(TSG, No orient, 0)
Upstream sequence
TCAAAAGAGAAGTGTTGCTGAAAATATTGACAATTAAAAATCATTCAAGGACTCTGAAGTATATTTCAGGCAGAAAGAGAGCAGCCTAAGGAGGACTTAT
Downstream sequence
TACAggattgaaagcatcaccgtgaattcataatttttaatatataaactgagagatatggaaatatatatatagtatgtgtataagtacacatgcatat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate