Basic Information
VIS ID
TVIS30008362
Fusion event
HIV-ADAMTS9-AS2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
64836688/64851013 (Hg38)
End
64836688/64851013 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
ADAMTS9-AS2
Nearest miRNA
hsa-let-7g/Upstream/4233143; hsa-mir-12124/Downstream/2374451;
Nearest TSS
ENST00000440867/Upstream/163013; ENST00000481004/Downstream/323945;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/162732, chr3-CpG: 63/Downstream/505515
Nearest cancer related gene
ADAMTS9-AS2(TSG, No orient, 0)
Upstream sequence
ggtttctggatggTATGGCATGTCTACCATCTCATGGGTAAAGTCTAGAGGAGAAACTTGCTCAAGTCAATGCTCTGTTCTTCATTTCAAAATATCATTG
Downstream sequence
TAGTAACGTTCTGAAGCAGTGTGAAAGTTTAAGTTTGGTTTAATTAAGTCATTTGGTTTAATAGCTTCATTCAACCATCTTATGAATATCAAGACCTGCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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