Basic Information
VIS ID
TVIS30008363
Fusion event
HIV-MAGI1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
65459677/65474002 (Hg38)
End
65459677/65474002 (Hg38)
Orient
+
Location type
Intronic
Target gene
MAGI1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-34a-5p ; hsa-mir-24-3p ; hsa-mir-324-3p
Nearest miRNA
hsa-let-7g/Upstream/4856132; hsa-mir-12124/Downstream/1751462;
Nearest TSS
ENST00000440867/Upstream/25765; ENST00000472514/Downstream/4632;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/94416, chr3-CpG: 69/Downstream/75007
Upstream sequence
AGACACACGGCAGACTCAAGAATTCACAGCCTTAGTCATGGTTTTGACTCTGACACATGCTGTGATTTCAAAAAAATCTTTTGTTgggcatggtggcatg
Downstream sequence
tgcctgtaatcctagctatttaggaggctgaggaaggaggagtgcttgagcccaggagttagacaccagtctaggcaacatagtgagaccacatatctac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate