Basic Information
VIS ID
TVIS30008365
Fusion event
HIV-LOC105377142 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
66737381/66686957 (Hg38)
End
66737381/66686957 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105377142
Nearest miRNA
hsa-let-7g/Upstream/6069087; hsa-mir-12124/Downstream/538507;
Nearest TSS
ENST00000440867/Upstream/185694; ENST00000460784/Downstream/311350;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/185533, chr3-CpG: 81/Downstream/311074
Nearby gene
LRIG1(No orient, 186536)
Upstream sequence
ATAAAGATTTAATCAAGCTATTTTGTCAAGAGCTTTAAAGCTTTAAAATACCAAGCATTTGATCCAATAATTCTCCTCAGGGAGTTTATCTTAAGGATAA
Downstream sequence
ACTTTATATCCTTAAGTTAATGACATATATCCTTAATTCTAAACATACTCatatataaaatatataattatatattatatgtgtatgtatatatacacac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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