Basic Information
VIS ID
TVIS30008368
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p13
Reference genome
GRCh37/hg19
Start
70703464/70654313 (Hg38)
End
70703464/70654313 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/1605278; hsa-mir-12124/Downstream/887657;
Nearest TSS
ENST00000440867/Upstream/321573; ENST00000465742/Downstream/312039;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/914256, chr3-CpG: 50/Downstream/410870
Nearby gene
FOXP1(No orient, 300401)
Nearest cancer related gene
FOXP1(TSG, No orient, 300401)
Upstream sequence
ACAATGCCAGCAGTCCAATTCAACACAGAGCAGGACATTAGTCAGTGTGAATTAGAATTGGGGGATGGGGATGCCACAGGGGCAAGGACAAAGCTGCCGA
Downstream sequence
TGTGGCTGCCAATGTGAGAGACAACAACAAGATGAGGCAATGAAACTactgtacagtaattggtggtcattaagatgagcctaagccatcagggaaagct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate