Basic Information
VIS ID
TVIS30008376
Fusion event
HIV-LOC105377171 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
78002053/77952902 (Hg38)
End
78002053/77952902 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105377171
Nearest miRNA
hsa-let-7g/Upstream/2214539; hsa-mir-12124/Downstream/1554985;
Nearest TSS
ENST00000440867/Upstream/317977; ENST00000461186/Downstream/93892;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/854654, chr3-CpG: 49/Downstream/1066011
Nearby gene
ROBO2(No orient, 302939)
Upstream sequence
ggagcctccagcagataattcattttctttgccttttacaggttctagtggctgcccacattcctaggctcatggccccatcgtctgtcttcaaagccag
Downstream sequence
taacgtcaactttgtcctttgctgttgctgtctctctggttctcacctccacttttctcttctccttctaaggatctttgtgattatattgggccctgca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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