Basic Information
VIS ID
TVIS30008378
Fusion event
HIV-LOC101927439 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
83274811/83225660 (Hg38)
End
83274811/83225660 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101927439
Nearest miRNA
hsa-let-7g/Upstream/3717691; hsa-mir-12124/Downstream/2160050;
Nearest TSS
ENST00000440867/Upstream/1239508; ENST00000488348/Downstream/1643915;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/417567, chr3-CpG: 48/Downstream/1733473
Nearby gene
LINC00971(No orient, 1412745)
Upstream sequence
CTTTCATTCCACTGAAAGTTTGTTTTATAATTTCCACTTTTCAGAATATAGGAACTTATGTTATTACTCTTGTCACCGTTATTAAAATTATTTGATAAAT
Downstream sequence
TTAACACAAAACATAAAATTAGGCTTCCAAGATTAATAATATTTGATTACCATGTGAGGATATTTATAGATTTCTCACCAAACCAGTTAGCTTTATATTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate