Basic Information
VIS ID
TVIS30008382
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
87509432/87460282 (Hg38)
End
87509432/87460282 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/234005; hsa-mir-12124/Downstream/8899682;
Nearest TSS
ENST00000440867/Upstream/183695; ENST00000319595/Downstream/333347;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/232846, chr3-CpG: 66/Downstream/332364
Nearby gene
POU1F1(No orient, 183695)
Upstream sequence
AGACATTACAATGCAAGATTTTATTGGGGGGCCTTTTGCTTAGGCTAATATGTAATTGCATGGTTGAAAAACTTATTTCAAATACTTACTTCAGGTCAAA
Downstream sequence
TAGCCTAAAAATACACCCTAATGATCATGCTTTTTGGGTgagcaagatgaccaaagagaatcttccagcaattgttcccttacatgaacactaaattgaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate