Basic Information
VIS ID
TVIS30008386
Fusion event
HIV-NSUN3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
93847913/94129069 (Hg38)
End
93847913/94129069 (Hg38)
Orient
+
Location type
Intronic
Target gene
NSUN3
miRNAs that regulate target gene
hsa-mir-6734-5p ; hsa-mir-1226-5p ; hsa-mir-6834-5p ; hsa-mir-526b-5p ; hsa-mir-223-3p ; hsa-mir-6804-5p ; hsa-mir-935 ; hsa-mir-6507-3p ; hsa-mir-4423-3p ; hsa-mir-6758-3p ; hsa-mir-6777-3p ; hsa-mir-455-3p ; hsa-mir-4639-3p ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-324-5p ; hsa-mir-4536-3p ; hsa-mir-6767-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-1277-5p ; hsa-mir-5011-5p ; hsa-mir-190a-3p ; hsa-mir-153-5p
Nearest miRNA
hsa-let-7g/Upstream/6902792; hsa-mir-12124/Downstream/2230895;
Nearest TSS
ENST00000440867/Upstream/52727; ENST00000466089/Downstream/809103;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/65805, chr3-CpG: 41/Downstream/808819
Nearby gene
NSUN3(No orient, 2283)
Upstream sequence
attattaaaaagtcaataaaataaaaaataacagacgctgatgaggctgtggagaaaaggaactgcttatgaactgttggtggaaatgtaaattacttca
Downstream sequence
gcctctatggaaagcagtttggagatttctcaaagaactttataacagaattgccatttgagctagcaatcccattagtgggtatatacccacaggaaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate