VISDB Viral Integration Site DataBase

VIS ID

TVIS30008394

Fusion event

HIV-CEP97 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

q12.3

Reference genome

Start

End

101488255/101769411 (Hg38)

Orient

-

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-92a-3p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-1273e ; hsa-mir-6516-5p ; hsa-mir-6851-5p ; hsa-mir-455-3p ; hsa-mir-3689d ; hsa-mir-6499-3p ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-4537 ; hsa-mir-1273f ; hsa-mir-6840-3p ; hsa-mir-4768-3p ; hsa-mir-665 ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-4802-5p ; hsa-mir-6888-5p ; hsa-mir-34b-3p ; hsa-mir-3658 ; hsa-mir-3653-3p ; hsa-mir-7705 ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-142-5p ; hsa-mir-5590-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-106a-5p ; hsa-mir-17-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-448 ; hsa-mir-661 ; hsa-mir-3160-3p ; hsa-mir-558 ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-4329 ; hsa-mir-6849-3p ; hsa-mir-6742-3p ; hsa-mir-510-3p ; hsa-mir-494-3p ; hsa-mir-4311 ; hsa-mir-7856-5p ; hsa-mir-376c-5p ; hsa-mir-376b-5p ; hsa-mir-4791 ; hsa-mir-3201 ; hsa-mir-4766-5p ; hsa-mir-4686 ; hsa-mir-6849-5p ; hsa-mir-3681-5p ; hsa-mir-548at-5p ; hsa-mir-1277-5p ; hsa-mir-552-5p ; hsa-mir-302c-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-190a-3p ; hsa-mir-3166 ; hsa-mir-6832-3p ; hsa-mir-6866-3p ; hsa-mir-188-5p ; hsa-mir-5011-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-3926 ; hsa-mir-6776-5p ; hsa-mir-383-3p ; hsa-mir-3065-3p ; hsa-mir-3165 ; hsa-mir-381-5p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-450a-5p ; hsa-mir-4737 ; hsa-mir-6089 ; hsa-mir-6134 ; hsa-mir-6748-5p ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-6787-3p

Nearest miRNA

hsa-let-7g/Upstream/1805013; hsa-mir-12124/Downstream/1754622;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/44396, chr3-CpG: 80/Downstream/9575

Upstream sequence

CTTCATTGTGTGTGTGttttttttttttttttcgagatagagtttcactgttgtcacccaggctggtctcagctcactgcaacctccacttcctgggtac

Downstream sequence

aagcgattctcctgcctcagcttcctgtgtagctgggattacaggtgtgcaaccacaaggctcggctaatttttttgtatttttagtagagatggggttt