Basic Information
VIS ID
TVIS30008395
Fusion event
HIV-NFKBIZ integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
101560596/101841752 (Hg38)
End
101560596/101841752 (Hg38)
Orient
-
Location type
Intronic
Target gene
NFKBIZ
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-335-5p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-193b-3p
Nearest miRNA
hsa-let-7g/Upstream/1877354; hsa-mir-12124/Downstream/1682281;
Nearest TSS
ENST00000440867/Upstream/13759; ENST00000486444/Downstream/7762;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/61948, chr3-CpG: 136/Downstream/7159
Upstream sequence
CTATGGGGataataaattattatttttaaGGAAAAGCATTCAACAAATCAACATATAAGATGATATCTGTTTTGAAAGCTCCTGAAAGATTTTATGTTCT
Downstream sequence
TTACAAAGAATTCTGGGCAAAAGGCAGCTGGGTTTTTATATTTACAAGATAGATGAAAATAGTTTTATAATAATCCAAGTGCAGAGAATGAGGAGATTCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate