Basic Information
VIS ID
TVIS30008397
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q13.11
Reference genome
GRCh37/hg19
Start
103662317/103943473 (Hg38)
End
103662317/103943473 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/419357; hsa-mir-12124/Downstream/5659355;
Nearest TSS
ENST00000440867/Upstream/1269560; ENST00000470756/Downstream/1423436;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/2093271, chr3-CpG: 32/Downstream/1410212
Nearby gene
MIR548A3(No orient, 241159)
Upstream sequence
accactttcatttagttaattgaactgtgattgtttagaatatccttttttcctctcttcctctctaatcattgatatttgcagtgtggtggggttttct
Downstream sequence
ttaacaataatgtttgattcctttctctttcttatttgtgtatctgttctttcattgaAACACAAAAATGTAAAACTCATATCTTTCTGTGGCATCTCTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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